18 Jun 2013 22:47Ina Hoeschele
*SNP annotation in R
19 Jun 2013 00:11Valerie Obenchain
**SNP annotation in R
18 Jun 2013 15:25Max Kauer
*makePdInfoPackage for Primeview arrays
18 Jun 2013 20:05Benilton Carvalho
**makePdInfoPackage for Primeview arrays
18 Jun 2013 21:18cstrato
**makePdInfoPackage for Primeview arrays
18 Jun 2013 14:27Nikul Soni
*Finding the common ID from 3 objects or excels files in R
18 Jun 2013 15:14Sean Davis
**Finding the common ID from 3 objects or excels files in R
18 Jun 2013 14:05Michael Love
*DESeq2 with multiple groups
18 Jun 2013 13:40Lorena Pantano
*DESeq2 with multiple groups
18 Jun 2013 08:43Margaret Linan
*DEXSeq Question <|------Ignore, I figured it out.
18 Jun 2013 07:53Gabriel Becker
*ReportingTools: formatting html report
18 Jun 2013 05:06Margaret Linan
*DEXSeq Question
18 Jun 2013 01:50nofe [guest]
*number of variable in svm plot
18 Jun 2013 00:55Rory Stark
*diffbind, paired end reads
18 Jun 2013 10:51Gordon Brown
**diffbind, paired end reads
18 Jun 2013 00:45Abhishek Pratap
*ReportingTools: formatting html report
18 Jun 2013 06:34Jason Hackney
**ReportingTools: formatting html report
18 Jun 2013 00:23Ryan C. Thompson
*Missing as.list generic from AnnotationDbi?
18 Jun 2013 00:43Ryan C. Thompson
**Missing as.list generic from AnnotationDbi?
17 Jun 2013 20:37Wolfgang Huber
*EMBO Practical Course on Bioinformatics and statistics for large-scale
17 Jun 2013 19:54Michael Breen
*DESEQ ANODEV : A time course study
17 Jun 2013 22:00Ryan C. Thompson
**DESEQ ANODEV : A time course study
18 Jun 2013 00:31Michael Breen
***DESEQ ANODEV : A time course study
18 Jun 2013 00:34Gordon K Smyth
***A time course study: using edgeR
17 Jun 2013 16:39xiayu [guest]
*using limma to analyze microarray data
17 Jun 2013 03:31yongzi chen
*why could I only get two different expressed genes by Limma?
17 Jun 2013 16:08Atul Kakrana
**why could I only get two different expressed genes by Limma?
17 Jun 2013 13:09Renaud Gaujoux
*GEOquery: incomplete feature data from GPL soft file
17 Jun 2013 12:00carol white
*carol white
17 Jun 2013 03:14FRANKLIN JOHNSON [guest]
*cannot adjust legend in diffreport output
17 Jun 2013 00:50Abhishek Pratap
*help with ReportingTools
17 Jun 2013 17:13James W. MacDonald
**help with ReportingTools
17 Jun 2013 19:37Abhishek Pratap
***help with ReportingTools
18 Jun 2013 00:39Abhishek Pratap
****help with ReportingTools
15 Jun 2013 19:17Murli Nair [guest]
*comparing seqnames
15 Jun 2013 19:31Martin Morgan
**[devteam-bioc] comparing seqnames
15 Jun 2013 19:42Nair, Murlidharan T
***[devteam-bioc] comparing seqnames
15 Jun 2013 20:26Nair, Murlidharan T
***[devteam-bioc] comparing seqnames
15 Jun 2013 09:29Naomi Altman
*Different number of differentially expressed genes after using ComBat
14 Jun 2013 17:21Alexandra Popa
*ComBat function (sva) generates very low adjusted p.values for a big n
14 Jun 2013 16:48Michaela Oswald
*Different number of differentially expressed genes after using ComBat
14 Jun 2013 12:12chm chag
*Error to install a package for Affymetrix data
16 Jun 2013 00:57James W. MacDonald
**Error to install a package for Affymetrix data
16 Jun 2013 08:00Dario Strbenac
***Error to install a package for Affymetrix data
15 Jun 2013 04:57Robert K.Bradley [guest]
*obtaining a complete global alignment via pairwiseAlignment
15 Jun 2013 15:45Martin Morgan
**obtaining a complete global alignment via pairwiseAlignment
15 Jun 2013 18:18Robert K. Bradley
***obtaining a complete global alignment via pairwiseAlignment
15 Jun 2013 19:19Martin Morgan
****obtaining a complete global alignment via pairwiseAlignment
15 Jun 2013 00:51Juliet Hannah
*snapCGH and clonesinfo
14 Jun 2013 19:47Martin Morgan
*BioC 2013: Talks and Workshops
14 Jun 2013 13:50Endre Sebestyen
*RIPSeeker package import error
14 Jun 2013 07:44Yanxiang Shi
*What is a good "control" for bacteria RNA-seq samples from a series of
15 Jun 2013 06:47Sam McInturf
**What is a good "control" for bacteria RNA-seq samples from a series of
18 Jun 2013 20:24Yanxiang Shi
***What is a good "control" for bacteria RNA-seq samples from a series of
18 Jun 2013 20:31Simon Anders
****What is a good "control" for bacteria RNA-seq samples from a series of
13 Jun 2013 23:02Eric Foss [guest]
*optimizing VariantTools\' performance
14 Jun 2013 00:24Michael Lawrence
**optimizing VariantTools\' performance
13 Jun 2013 21:18Narges [guest]
*TMM normalization of DESeq input data
14 Jun 2013 01:58Ryan C. Thompson
**TMM normalization of DESeq input data
13 Jun 2013 19:09Dan Tenenbaum
*Error loading GO.db
13 Jun 2013 17:06Wang Peter
*do we need remove PCR duplicate before we look for DE genes
13 Jun 2013 19:09Simon Anders
**do we need remove PCR duplicate before we look for DE genes
13 Jun 2013 20:20Lucia
***do we need remove PCR duplicate before we look for DE genes
13 Jun 2013 21:05Jonathan Cairns
****do we need remove PCR duplicate before we look for DE genes
13 Jun 2013 16:46Joanne [guest]
*lumiR error on *.idat and *.txt formated file
13 Jun 2013 18:34Mark Dunning
**lumiR error on *.idat and *.txt formated file
13 Jun 2013 16:31Jack Zhu
*SRAdb package - problems
13 Jun 2013 16:12Jack Zhu
*getGEO vs GEOmetadb
13 Jun 2013 14:32Alessandro Botton [guest]
*Multi-factor multi-level analysis of RNAseq data
13 Jun 2013 16:58Sam McInturf
**Multi-factor multi-level analysis of RNAseq data
13 Jun 2013 17:06Alessandro Botton
***Multi-factor multi-level analysis of RNAseq data
13 Jun 2013 12:55Johnson, William Evan
*[combat] par.priot=FALSE
12 Jun 2013 19:36YBao
*Rat St gene array 2.0
12 Jun 2013 21:09James W. MacDonald
**Rat St gene array 2.0
12 Jun 2013 21:53Stephen Turner
**Rat St gene array 2.0
12 Jun 2013 19:34Margaret Linan
*DEXSeq: Factor
12 Jun 2013 15:37Maria [guest]
*HyperGtest interpretation
12 Jun 2013 16:37James W. MacDonald
**HyperGtest interpretation
12 Jun 2013 15:30Simone
*DEXSeq: Problems trying to reproduce the example of the vignette
16 Jun 2013 00:57Wolfgang Huber
**DEXSeq: Problems trying to reproduce the example of the vignette
17 Jun 2013 18:13Simone
***DEXSeq: Problems trying to reproduce the example of the vignette
12 Jun 2013 04:38Duval, Manuel
*oligo package
12 Jun 2013 05:30Benilton Carvalho
**oligo package
12 Jun 2013 04:03Wang Peter
*error to load the library affycoretools
12 Jun 2013 11:57Sean Davis
**error to load the library affycoretools
11 Jun 2013 21:54Delasa Aghamirzaie
*DEXSeq, looking for a clever way for interpretation of results
11 Jun 2013 16:57James Perkins
*return value used for filter amongst attributes, getBM(), biomaRt
11 Jun 2013 15:02Johnson, William Evan
*Covariate for batch effect removal by ComBat
11 Jun 2013 06:14Alan Smith
*edgeR - GLM for multifactors
11 Jun 2013 16:06James W. MacDonald
**edgeR - GLM for multifactors
11 Jun 2013 02:44Gordon K Smyth
*DESEQ ANODEV : A time course study
11 Jun 2013 05:47Michael Breen
**DESEQ ANODEV : A time course study
11 Jun 2013 02:36Gordon K Smyth
*How is LIMMA actually calculating the average expression value
11 Jun 2013 09:19Garcia Orellana,Miriam
**How is LIMMA actually calculating the average expression value
11 Jun 2013 10:51Gordon K Smyth
***How is LIMMA actually calculating the average expression value
11 Jun 2013 15:25Garcia Orellana,Miriam
****How is LIMMA actually calculating the average expression value
12 Jun 2013 02:54Gordon K Smyth
*****How is LIMMA actually calculating the average expression value
11 Jun 2013 00:00Ed Siefker
*topTable coefficient
11 Jun 2013 02:00Atul Kakrana
**topTable coefficient
10 Jun 2013 22:34Lucas Santana dos Santos
*Error when running Gene Set Variant Analysis (GSVA)