28 Jul 11:54 2014Kaj Chokeshaiusaha [guest]
*Can Rank-production be applied to test the condition's effects on trea
27 Jul 21:37 2014Tine Casneuf [guest]
*frma and alternative CDFs
27 Jul 23:26 2014Matthew McCall
**frma and alternative CDFs
27 Jul 13:33 2014Alex [guest]
*'RankMerging' changes sample names
27 Jul 00:38 2014Maria Kesa
*.cel file processing is not working for an old array
27 Jul 12:58 2014Sean Davis
**.cel file processing is not working for an old array
27 Jul 22:20 2014Maria Kesa
***.cel file processing is not working for an old array
28 Jul 03:41 2014Martin Morgan
****.cel file processing is not working for an old array
27 Jul 01:26 2014Jie Yang [guest]
*Batch effect confounded with additional covariate
26 Jul 06:12 2014Rishi [guest]
*rlog() not in DESeq2?
26 Jul 12:39 2014Michael Love
**rlog() not in DESeq2?
27 Jul 02:17 2014Rishi Sinha
***rlog() not in DESeq2?
27 Jul 14:28 2014Michael Love
****rlog() not in DESeq2?
25 Jul 21:16 2014Sabet, Julia A
*cummeRbund graphics not working
25 Jul 21:32 2014Loyal A. Goff
**cummeRbund graphics not working
25 Jul 21:39 2014Sabet, Julia A
***cummeRbund graphics not working
25 Jul 17:20 2014Kaj Chokeshaiusaha [guest]
*Please comment the way I'm thinking about the way to find differential
25 Jul 17:52 2014James W. MacDonald
**Please comment the way I'm thinking about the way to find differential
25 Jul 17:53 2014Sean Davis
**Please comment the way I'm thinking about the way to find differential
25 Jul 20:32 2014Kaj Chokeshaiusaha
***Please comment the way I'm thinking about the way to find differential
25 Jul 20:51 2014Sean Davis
****Please comment the way I'm thinking about the way to find differential
26 Jul 09:09 2014Kaj Chokeshaiusaha
*****Please comment the way I'm thinking about the way to find differential
26 Jul 02:00 2014Dario Strbenac
****Please comment the way I'm thinking about the way to find differential
25 Jul 14:42 2014carol white
*selection of probes, probesets mapping to the same gene
25 Jul 13:41 2014Benedikt Athmer [guest]
*limma contrast.matrix and design with "common reference"
25 Jul 16:55 2014James W. MacDonald
**limma contrast.matrix and design with "common reference"
24 Jul 23:59 2014Rao,Xiayu
*heatmap.2 x-axis label order problem
25 Jul 01:32 2014James W. MacDonald
**heatmap.2 x-axis label order problem
24 Jul 20:42 2014Ty Thomson
*dealing with counfounded effects in experiment design
24 Jul 17:04 2014David
*affymetrix rat 2.0 gene annotation issue
24 Jul 19:06 2014Marc Carlson
**affymetrix rat 2.0 gene annotation issue
24 Jul 17:01 2014Peter Davidsen
*Is a subset of my arrays from degraded RNA?
24 Jul 17:59 2014James W. MacDonald
**Is a subset of my arrays from degraded RNA?
24 Jul 14:07 2014Kaj Chokeshaiusaha [guest]
*Suitable learning sets, gene selection methods and classification meth
24 Jul 15:45 2014Sean Davis
**Suitable learning sets, gene selection methods and classification meth
25 Jul 14:22 2014Kaj Chokeshaiusaha
***Suitable learning sets, gene selection methods and classification meth
25 Jul 17:03 2014Kaj Chokeshaiusaha
****Suitable learning sets, gene selection methods and classification meth
24 Jul 08:29 2014Gordon K Smyth
*Technical Replicates in EdgeR
24 Jul 00:59 2014Nhu Quynh T. Tran
*Unable to load XPS package in R studio
24 Jul 14:11 2014cstrato
**Unable to load XPS package in R studio
24 Jul 17:20 2014Nhu Quynh T. Tran
***Unable to load XPS package in R studio
24 Jul 18:58 2014Nhu Quynh T. Tran
***XPS crash while importing exon scheme
24 Jul 20:46 2014cstrato
****XPS crash while importing exon scheme
24 Jul 21:22 2014Nhu Quynh T. Tran
*****XPS crash while importing exon scheme
24 Jul 21:36 2014cstrato
******XPS crash while importing exon scheme
24 Jul 22:10 2014Nhu Quynh T. Tran
*******XPS crash while importing exon scheme
24 Jul 22:19 2014cstrato
********XPS crash while importing exon scheme
24 Jul 23:48 2014Nhu Quynh T. Tran
*********XPS crash while importing exon scheme
25 Jul 00:09 2014cstrato
**********XPS crash while importing exon scheme
23 Jul 14:22 2014Kuenne, Carsten
*DESeq2 question regarding log2FC
23 Jul 17:32 2014Michael Love
**DESeq2 question regarding log2FC
23 Jul 15:49 2014Sin Yee Ku
*Follow up on progress for brainarray cdfs on exon arrays.
23 Jul 13:39 2014Pesce, Francesco
*DESEq | Batch effect | VST data and linear model adjustment
23 Jul 14:03 2014Simon Anders
**DESEq | Batch effect | VST data and linear model adjustment
24 Jul 17:26 2014Pesce, Francesco
***DESEq | Batch effect | VST data and linear model adjustment
23 Jul 13:19 2014Giovanni Calice
*dmpFinder results
23 Jul 03:53 2014Gihanna Galindez
*DESeq Run Unequal Sample Size
23 Jul 10:10 2014Simon Anders
**DESeq Run Unequal Sample Size
23 Jul 00:26 2014Gordon K Smyth
*time course experiment
23 Jul 00:42 2014Rao,Xiayu
**time course experiment
23 Jul 01:03 2014Gordon K Smyth
***time course experiment
23 Jul 17:51 2014Rao,Xiayu
****time course experiment
24 Jul 00:47 2014Gordon K Smyth
*****time course experiment
22 Jul 21:56 2014shirley zhang
*compare RNASeq with Exon array data at the gene-level and exon-level
22 Jul 21:11 2014VG
*read.celfiles error
22 Jul 21:30 2014James W. MacDonald
**read.celfiles error
22 Jul 18:21 2014James W. MacDonald
*annotating microarray data with mogene10stv1
22 Jul 21:41 2014Jakub Stanislaw Nowak
**annotating microarray data with mogene10stv1
22 Jul 22:04 2014Rao,Xiayu
***annotating microarray data with mogene10stv1
22 Jul 23:10 2014Jakub Stanislaw Nowak
****annotating microarray data with mogene10stv1
22 Jul 17:31 2014Eric Fournier
*Rebuild GO.sqlite from GO.db using complete GO database
22 Jul 19:35 2014Marc Carlson
**Rebuild GO.sqlite from GO.db using complete GO database
25 Jul 20:53 2014Eric Fournier
***Rebuild GO.sqlite from GO.db using complete GO database
22 Jul 17:13 2014Reema Singh
*Bioinformatics Minisymposium at the University of Dundee
21 Jul 17:18 2014avichai.amrad
*Deseq for pairwise comparison among many pairs
22 Jul 13:44 2014Michael Love
**Deseq for pairwise comparison among many pairs
21 Jul 10:59 2014Kuenne, Carsten
*DESeq2 missing columns
22 Jul 14:02 2014Michael Love
**DESeq2 missing columns
22 Jul 04:14 2014Gordon K Smyth
*limma, analysis on subset of data gives completely different results
22 Jul 00:23 2014Thornton, Matthew
*xps - error in normalize - "Error: Length of non-varying units is zero
23 Jul 22:10 2014cstrato
**xps - error in normalize - "Error: Length of non-varying units is zero
26 Jul 10:40 2014cstrato
**xps - error in normalize - "Error: Length of non-varying units is zero
21 Jul 22:31 2014Enrico Ferrero
*Linkage disequilibrium with 1000 Genomes/HapMap
22 Jul 17:59 2014Valerie Obenchain
**Linkage disequilibrium with 1000 Genomes/HapMap
21 Jul 21:20 2014Rao,Xiayu
*time course experiment design
22 Jul 17:22 2014James W. MacDonald
**time course experiment design
21 Jul 19:28 2014Max Salm [guest]
*SomaticSignatures: could not find function "motifMatrix"
21 Jul 20:19 2014Julian Gehring
**SomaticSignatures: could not find function "motifMatrix"
21 Jul 20:17 2014Julian Gehring
**SomaticSignatures: could not find function "motifMatrix"
21 Jul 20:14 2014Julian Gehring
**SomaticSignatures: could not find function "motifMatrix"
21 Jul 18:45 2014Faryabi, Robert (NIH/NCI) [F]
*error in SRAdb
21 Jul 18:55 2014Dan Tenenbaum
**error in SRAdb
21 Jul 22:14 2014Jack Zhu
***error in SRAdb
21 Jul 18:08 2014Rao,Xiayu
*Affymetrix mouse 430_2 array - gene expression and annotation
21 Jul 18:42 2014James W. MacDonald
**Affymetrix mouse 430_2 array - gene expression and annotation
21 Jul 19:19 2014Rao,Xiayu
***Affymetrix mouse 430_2 array - gene expression and annotation
21 Jul 19:44 2014James W. MacDonald
****Affymetrix mouse 430_2 array - gene expression and annotation
21 Jul 19:56 2014Rao,Xiayu
*****Affymetrix mouse 430_2 array - gene expression and annotation
22 Jul 18:15 2014Rao,Xiayu
**Affymetrix mouse 430_2 array - annotation problem
22 Jul 18:49 2014James W. MacDonald
***Affymetrix mouse 430_2 array - annotation problem