23 Jul 00:26 2014Gordon K Smyth
*time course experiment
23 Jul 00:42 2014Rao,Xiayu
**time course experiment
23 Jul 01:03 2014Gordon K Smyth
***time course experiment
22 Jul 21:56 2014shirley zhang
*compare RNASeq with Exon array data at the gene-level and exon-level
22 Jul 21:11 2014VG
*read.celfiles error
22 Jul 21:30 2014James W. MacDonald
**read.celfiles error
22 Jul 18:21 2014James W. MacDonald
*annotating microarray data with mogene10stv1
22 Jul 21:41 2014Jakub Stanislaw Nowak
**annotating microarray data with mogene10stv1
22 Jul 22:04 2014Rao,Xiayu
***annotating microarray data with mogene10stv1
22 Jul 23:10 2014Jakub Stanislaw Nowak
****annotating microarray data with mogene10stv1
22 Jul 17:31 2014Eric Fournier
*Rebuild GO.sqlite from GO.db using complete GO database
22 Jul 19:35 2014Marc Carlson
**Rebuild GO.sqlite from GO.db using complete GO database
22 Jul 17:13 2014Reema Singh
*Bioinformatics Minisymposium at the University of Dundee
21 Jul 17:18 2014avichai.amrad
*Deseq for pairwise comparison among many pairs
22 Jul 13:44 2014Michael Love
**Deseq for pairwise comparison among many pairs
21 Jul 10:59 2014Kuenne, Carsten
*DESeq2 missing columns
22 Jul 14:02 2014Michael Love
**DESeq2 missing columns
22 Jul 04:14 2014Gordon K Smyth
*limma, analysis on subset of data gives completely different results
22 Jul 00:23 2014Thornton, Matthew
*xps - error in normalize - "Error: Length of non-varying units is zero
21 Jul 22:31 2014Enrico Ferrero
*Linkage disequilibrium with 1000 Genomes/HapMap
22 Jul 17:59 2014Valerie Obenchain
**Linkage disequilibrium with 1000 Genomes/HapMap
21 Jul 21:20 2014Rao,Xiayu
*time course experiment design
22 Jul 17:22 2014James W. MacDonald
**time course experiment design
21 Jul 19:28 2014Max Salm [guest]
*SomaticSignatures: could not find function "motifMatrix"
21 Jul 20:19 2014Julian Gehring
**SomaticSignatures: could not find function "motifMatrix"
21 Jul 20:17 2014Julian Gehring
**SomaticSignatures: could not find function "motifMatrix"
21 Jul 20:14 2014Julian Gehring
**SomaticSignatures: could not find function "motifMatrix"
21 Jul 18:45 2014Faryabi, Robert (NIH/NCI) [F]
*error in SRAdb
21 Jul 18:55 2014Dan Tenenbaum
**error in SRAdb
21 Jul 22:14 2014Jack Zhu
***error in SRAdb
21 Jul 18:08 2014Rao,Xiayu
*Affymetrix mouse 430_2 array - gene expression and annotation
21 Jul 18:42 2014James W. MacDonald
**Affymetrix mouse 430_2 array - gene expression and annotation
21 Jul 19:19 2014Rao,Xiayu
***Affymetrix mouse 430_2 array - gene expression and annotation
21 Jul 19:44 2014James W. MacDonald
****Affymetrix mouse 430_2 array - gene expression and annotation
21 Jul 19:56 2014Rao,Xiayu
*****Affymetrix mouse 430_2 array - gene expression and annotation
22 Jul 18:15 2014Rao,Xiayu
**Affymetrix mouse 430_2 array - annotation problem
22 Jul 18:49 2014James W. MacDonald
***Affymetrix mouse 430_2 array - annotation problem
22 Jul 19:06 2014Rao,Xiayu
****Affymetrix mouse 430_2 array - annotation problem
21 Jul 16:52 2014Enrico Ferrero
*Linkage disequilibrium with 1000 Genomes/HapMap
21 Jul 16:32 2014Michael Love
*Problem elaborating contrasts for DESeq2 analysis
22 Jul 17:18 2014Marine Rohmer
**Problem elaborating contrasts for DESeq2 analysis
22 Jul 17:24 2014Michael Love
***Problem elaborating contrasts for DESeq2 analysis
21 Jul 16:13 2014Kaj Chokeshaiusaha [guest]
*How to hide or suppress note about ward method in clValid package?
21 Jul 17:34 2014Julian Gehring
**How to hide or suppress note about ward method in clValid package?
21 Jul 02:16 2014Gordon K Smyth
*RNA-Seq, generate batch-free count matrix
21 Jul 02:18 2014Gordon K Smyth
**RNA-Seq, generate batch-free count matrix
21 Jul 03:48 2014Brian Haas
***RNA-Seq, generate batch-free count matrix
21 Jul 04:13 2014Gordon K Smyth
****RNA-Seq, generate batch-free count matrix
20 Jul 21:00 2014Tim Triche, Jr.
*Calculate the x when f(x) reaches its minimum
20 Jul 16:11 2014Mike Miller
*DESeq2 - interaction
21 Jul 03:22 2014Michael Love
**DESeq2 - interaction
20 Jul 06:04 2014Zhan Tianyu
*Calculate the x when f(x) reaches its minimum
20 Jul 05:01 2014Brian Haas
*RNA-Seq, generate batch-free count matrix
21 Jul 02:00 2014Dario Strbenac
**RNA-Seq, generate batch-free count matrix
21 Jul 05:37 2014Steve Lianoglou
**RNA-Seq, generate batch-free count matrix
21 Jul 18:36 2014davide risso
**RNA-Seq, generate batch-free count matrix
22 Jul 15:07 2014Jeff Leek
***RNA-Seq, generate batch-free count matrix
22 Jul 15:56 2014Brian Haas
****RNA-Seq, generate batch-free count matrix
19 Jul 17:51 2014Aditi [guest]
*RNAseq expression threshold using DESeq2 normalised counts
19 Jul 18:41 2014QAMRA Aditi (GIS
**RNAseq expression threshold using DESeq2 normalised counts
20 Jul 17:07 2014Michael Love
**RNAseq expression threshold using DESeq2 normalised counts
19 Jul 14:30 2014Jakub Stanislaw Nowak
*annotating microarray data with mogene10stv1
21 Jul 16:43 2014James W. MacDonald
**annotating microarray data with mogene10stv1
19 Jul 12:45 2014Gordon K Smyth
*limma, analysis on subset of data gives completely different results
18 Jul 11:27 2014jarod_v6-VGgt2q2+T+FeoWH0uzbU5
*Biomart annotation
18 Jul 19:00 2014John Blischak
**Biomart annotation
18 Jul 19:30 2014Steffen Durinck
***Biomart annotation
17 Jul 16:49 2014Mike Miller
*DESeq2, plotting residuals vs.fitted values
18 Jul 16:06 2014Michael Love
**DESeq2, plotting residuals vs.fitted values
18 Jul 02:37 2014Gordon K Smyth
*Complex contrasts for between and within subject comparisons
18 Jul 02:17 2014Abhishek Pratap
*processing Illumina HT12v4.0 expression data from GEO
17 Jul 21:49 2014Alex [guest]
*Error while loading library GeneExpressionSignature
18 Jul 08:35 2014yang Cao
**Error while loading library GeneExpressionSignature
17 Jul 17:22 2014Martin Morgan
*Bioc 2014 July 31 - August 1, Boston
17 Jul 17:20 2014Ido Tamir
*DESeq2 1.2.10 vs 1.5.26
17 Jul 17:35 2014Michael Love
**DESeq2 1.2.10 vs 1.5.26
17 Jul 17:59 2014Michael Love
***DESeq2 1.2.10 vs 1.5.26
17 Jul 15:59 2014Arvid Sondén
*limma, analysis on subset of data gives completely different results
17 Jul 16:39 2014Axel Klenk
**limma, analysis on subset of data gives completely different results
17 Jul 17:21 2014James W. MacDonald
**limma, analysis on subset of data gives completely different results
17 Jul 22:05 2014Aaron Mackey
***limma, analysis on subset of data gives completely different results
20 Jul 17:33 2014Marcin Cieślik
****limma, analysis on subset of data gives completely different results
17 Jul 14:26 2014Imène SENINET
*[Help for DESeq]: Error in lfproc - newsplit: out of vertex space
19 Jul 17:08 2014Wolfgang Huber
**[Help for DESeq]: Error in lfproc - newsplit: out of vertex space
16 Jul 19:30 2014Konika Chawla
*top table or anova?
16 Jul 21:23 2014James W. MacDonald
**top table or anova?
16 Jul 19:10 2014Neetha [guest]
*Interaction term logFC
16 Jul 19:37 2014Michael Love
**Interaction term logFC
16 Jul 19:46 2014James W. MacDonald
**Interaction term logFC
16 Jul 19:09 2014Luo Weijun
*Pathview hickups
16 Jul 19:03 2014James W. MacDonald
*error with makecdfenv package
16 Jul 19:39 2014cstrato
**error with makecdfenv package
16 Jul 19:49 2014James W. MacDonald
***error with makecdfenv package
16 Jul 20:06 2014cstrato
****error with makecdfenv package
17 Jul 09:49 2014TRAN Trang
*****error with makecdfenv package
16 Jul 17:25 2014Thuy Do
*FW: Help with DESeq
16 Jul 17:35 2014Simon Anders
**FW: Help with DESeq
16 Jul 15:35 2014Remo [guest]
*Problem in generating heatmap after R and Bioconductor Update
16 Jul 15:51 2014DaN
**Problem in generating heatmap after R and Bioconductor Update
16 Jul 17:57 2014Remo Chiozzotto
***Problem in generating heatmap after R and Bioconductor Update